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metagenomic binning

4 papers

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Co-occurring keywords · papers mentioning both

representation learning (3) assembly graph (2) graph neural network (2) biological constraint (1) heterophily constraint (1) k-mer representation (1) genome representation (1) heterophilous constraint (1) connectivity constraint (1) marker gene (1)

Papers

Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning ICLR 2024 Revisiting K-mer Profile for Effective and Scalable Genome Representation Learning NeurIPS 2024 Metagenomic Binning using Connectivity-constrained Variational Autoencoders ICML 2023 RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning AAAI 2022