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peptide sequencing

10 papers

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Co-occurring keywords · papers mentioning both

mass spectrometry (9) deep learning (5) protein identification (3) de novo sequencing (2) post-translational modification (2) de novo peptide sequencing (2) tandem mass spectrometry (2) amino acid prediction (1) spectrum matching (1) protein analysis (1)

Papers

Regressor-guided Diffusion Model for De Novo Peptide Sequencing with Explicit Mass Control AAAI 2026 A Comprehensive and Systematic Review for Deep Learning-Based De Novo Peptide Sequencing IJCAI 2025 Bridging the Gap between Database Search and \emph{De Novo} Peptide Sequencing with SearchNovo ICLR 2025 ReNovo: Retrieval-Based \emph{De Novo} Mass Spectrometry Peptide Sequencing ICLR 2025 AdaNovo: Towards Robust \emph{De Novo} Peptide Sequencing in Proteomics against Data Biases NeurIPS 2024 ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing AAAI 2024 NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics NeurIPS 2024 PROSPECT PTMs: Rich Labeled Tandem Mass Spectrometry Dataset of Modified Peptides for Machine Learning in Proteomics NeurIPS 2024 De novo mass spectrometry peptide sequencing with a transformer model ICML 2022 Improving Tandem Mass Spectra Analysis with Hierarchical Learning IJCAI 2020