conftrace_

protein engineering

10 papers

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Co-occurring keywords

generative model (2892) bayesian optimization (624) global epistasis (1) fitness function (8) thermodynamic stability (2) automated machine learning (94) controlled generation (83) wasserstein autoencoder (13) agent framework (21) latent generative model (5)

Papers

VenusFactory: An Integrated System for Protein Engineering with Data Retrieval and Language Model Fine-Tuning ACL 2025
AutoProteinEngine: A Large Language Model Driven Agent Framework for Multimodal AutoML in Protein Engineering COLING 2025
Contrastive losses as generalized models of global epistasis NIPS 2024
Tree Search-Based Evolutionary Bandits for Protein Sequence Optimization AAAI 2024
A survey and benchmark of high-dimensional Bayesian optimization of discrete sequences NIPS 2024
Extrapolative Controlled Sequence Generation via Iterative Refinement ICML 2023
Importance Weighted Expectation-Maximization for Protein Sequence Design ICML 2023
Disentangled Wasserstein Autoencoder for T-Cell Receptor Engineering NIPS 2023
Predicting a Protein's Stability under a Million Mutations NIPS 2023
Optimal Design of Stochastic DNA Synthesis Protocols based on Generative Sequence Models AISTATS 2022