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protein embedding

4 papers

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Co-occurring keywords · papers mentioning both

protein-protein interaction (2) self-supervised pretraining (2) tertiary structure (1) functional prediction (1) amino acid residue (1) protein structure quality assessment (1) se(3)-invariant feature (1) multi-source text description (1) zero-shot protein search (1) masked codebook modeling (1)

Papers

Protein-STORY: Semantic Text-Oriented Representation Yields biologically meaningful Protein embeddings ACL 2026 MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding ICLR 2024 Self-Supervised Pre-training for Protein Embeddings Using Tertiary Structures AAAI 2022 Evaluating Protein Transfer Learning with TAPE NeurIPS 2019