conftrace_

gene expression

58 papers

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Co-occurring keywords

spatial transcriptomics (36) single-cell rna sequencing (24) variational inference (2069) representation learning (6206) gene expression analysis (5) graph neural network (3962) single-cell transcriptomics (8) optimal transport (948) single-cell analysis (12) single-cell rna-seq (10)

Papers

Departures: Distributional Transport for Single-Cell Perturbation Prediction with Neural Schrödinger Bridges AAAI 2026
When Genes Speak: A Semantic-Guided Framework for Spatially Resolved Transcriptomics Data Clustering AAAI 2026
GATCL: An Adaptive Contrastive Learning Framework Based on MHGAT for Spatial Domain Identification in Spatial Transcriptomics AAAI 2026
Gene Incremental Learning for Single-Cell Transcriptomics AAAI 2026
Refinement Contrastive Learning of Cell–Gene Associations for Unsupervised Cell Type Identification AAAI 2026
Auxiliary Gene Learning: Spatial Gene Expression Estimation by Auxiliary Gene Selection AAAI 2026
STINR: Deciphering Spatial Transcriptomics via Implicit Neural Representation CVPR 2025
Spatially Resolved Transcriptomics Data Clustering with Tailored Spatial-scale Modulation IJCAI 2025
DUSTED: Dual-Attention Enhanced Spatial Transcriptomics Denoiser AAAI 2025
Identifying Causal Mechanism Shifts Under Additive Models with Arbitrary Noise IJCAI 2025
Conditional Causal Representation Learning for Heterogeneous Single-cell RNA Data Integration and Prediction IJCAI 2025
Multi-modal Transfer Learning between Biological Foundation Models NIPS 2024
SCTrans: Multi-scale scRNA-seq Sub-vector Completion Transformer for Gene-selective Cell Type Annotation IJCAI 2024
Transcriptomics-guided Slide Representation Learning in Computational Pathology CVPR 2024
Unsupervised Gene-Cell Collective Representation Learning with Optimal Transport AAAI 2024
STimage-1K4M: A histopathology image-gene expression dataset for spatial transcriptomics NIPS 2024
A benchmark for prediction of transcriptomic responses to chemical perturbations across cell types NIPS 2024
Cell ontology guided transcriptome foundation model NIPS 2024
Gene-Gene Relationship Modeling Based on Genetic Evidence for Single-Cell RNA-Seq Data Imputation NIPS 2024
Designing Cell-Type-Specific Promoter Sequences Using Conservative Model-Based Optimization NIPS 2024
Monge, Bregman and Occam: Interpretable Optimal Transport in High-Dimensions with Feature-Sparse Maps ICML 2023
xTrimoGene: An Efficient and Scalable Representation Learner for Single-Cell RNA-Seq Data NIPS 2023
Unsupervised Deep Embedded Fusion Representation of Single-Cell Transcriptomics AAAI 2023
SHINE: SubHypergraph Inductive Neural nEtwork NIPS 2022
Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution NIPS 2022