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biomedical nlp

93 papers

Papers

Better Generalizing to Unseen Concepts: An Evaluation Framework and An LLM-Based Auto-Labeled Pipeline for Biomedical Concept Recognition EACL 2026 Mind Your Steps in Biomedical Named Entity Recognition: First Extract, Tag Afterwards EACL 2026 Position: Biomedical NLP Demands Specialization, Not Generalization EACL 2026 Reasoning or Knowledge: Stratified Evaluation of Biomedical LLMs EACL 2026 A benchmark for end-to-end zero-shot biomedical relation extraction with LLMs: experiments with OpenAI models AACL 2025 AdaBioBERT: Adaptive Token Sequence Learning for Biomedical Named Entity Recognition ACL 2025 CRAB: A Benchmark for Evaluating Curation of Retrieval-Augmented LLMs in Biomedicine EMNLP 2025 JMedBench: A Benchmark for Evaluating Japanese Biomedical Large Language Models COLING 2025 LLMForum-RAG: A Multilingual, Multi-domain Framework for Factual Reasoning via Weighted Retrieval and LLM Collaboration IJCNLP 2025 MA-COIR: Leveraging Semantic Search Index and Generative Models for Ontology-Driven Biomedical Concept Recognition ACL 2025 MedPath: Multi-Domain Cross-Vocabulary Hierarchical Paths for Biomedical Entity Linking IJCNLP 2025 Shared Task at Biolaysumm2025 : Extract then summarize approach Augmented with UMLS based Definition Retrieval for Lay Summary generation. ACL 2025 Towards Robust Comparisons of NLP Models: A Case Study COLING 2025 TripleCheck: Transparent Post-Hoc Verification of Biomedical Claims in AI-Generated Answers EMNLP 2025 A Benchmark Evaluation of Clinical Named Entity Recognition in French COLING 2024 A Fast and Sound Tagging Method for Discontinuous Named-Entity Recognition EMNLP 2024 BAND: Biomedical Alert News Dataset AAAI 2024 BioMistral: A Collection of Open-Source Pretrained Large Language Models for Medical Domains ACL 2024 DrBenchmark: A Large Language Understanding Evaluation Benchmark for French Biomedical Domain COLING 2024 Foundation Model for Biomedical Graphs: Integrating Knowledge Graphs and Protein Structures to Large Language Models ACL 2024 iHealth-Chile-3&2 at RRG24: Template Based Report Generation ACL 2024 IITK at SemEval-2024 Task 2: Exploring the Capabilities of LLMs for Safe Biomedical Natural Language Inference for Clinical Trials SemEval 2024 Large Language Models for Biomedical Knowledge Graph Construction: Information extraction from EMR notes ACL 2024 M-QALM: A Benchmark to Assess Clinical Reading Comprehension and Knowledge Recall in Large Language Models via Question Answering ACL 2024 SemEval-2024 Task 2: Safe Biomedical Natural Language Inference for Clinical Trials SemEval 2024