conftrace_

genomic sequence

13 papers

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Co-occurring keywords · papers mentioning both

dna sequence (4) foundation model (3) generative model (3) self-supervised learning (3) self-supervised pretraining (2) in-context learning (2) transfer learning (2) token merging (1) domain transfer (1) dynamic tokenization (1)

Papers

MergeDNA: Context-Aware Genome Modeling with Dynamic Tokenization Through Token Merging AAAI 2026 Bio-xLSTM: Generative modeling, representation and in-context learning of biological and chemical sequences ICLR 2025 Absorb & Escape: Overcoming Single Model Limitations in Generating Heterogeneous Genomic Sequences NeurIPS 2024 DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA NeurIPS 2024 Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA NeurIPS 2024 MP-RNA: Unleashing Multi-species RNA Foundation Model via Calibrated Secondary Structure Prediction EMNLP 2024 HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution NeurIPS 2023 One-Pass Diversified Sampling with Application to Terabyte-Scale Genomic Sequence Streams ICML 2022 SNP2Vec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study ACL 2022 Amalgamation of protein sequence, structure and textual information for improving protein-protein interaction identification ACL 2020 Efficient Algorithms for Generating Provably Near-Optimal Cluster Descriptors for Explainability AAAI 2020 Likelihood Ratios for Out-of-Distribution Detection NeurIPS 2019 An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis NeurIPS 2008