conftrace_

genomic sequence

12 papers

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Co-occurring keywords

dna sequence (12) foundation model (735) self-supervised learning (3777) generative model (2892) transfer learning (5449) compositional generation (33) dna synthesis (1) self-supervised pretraining (85) protein structure (59) self-supervised pre-training (87)

Papers

MergeDNA: Context-Aware Genome Modeling with Dynamic Tokenization Through Token Merging AAAI 2026
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA NIPS 2024
Absorb & Escape: Overcoming Single Model Limitations in Generating Heterogeneous Genomic Sequences NIPS 2024
MP-RNA: Unleashing Multi-species RNA Foundation Model via Calibrated Secondary Structure Prediction EMNLP 2024
Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA NIPS 2024
HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution NIPS 2023
One-Pass Diversified Sampling with Application to Terabyte-Scale Genomic Sequence Streams ICML 2022
SNP2Vec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study ACL 2022
Efficient Algorithms for Generating Provably Near-Optimal Cluster Descriptors for Explainability AAAI 2020
Amalgamation of protein sequence, structure and textual information for improving protein-protein interaction identification ACL 2020
Likelihood Ratios for Out-of-Distribution Detection NIPS 2019
An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis NIPS 2008