conftrace_

dna sequence

12 papers

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Co-occurring keywords

genomic sequence (12) long-range dependency (82) biological sequence (15) foundation model (735) convolutional neural network (4226) tokenization strategy (5) genomic language (1) gene regulatory network (24) scalable model (5) heterogeneous graph neural network (35)

Papers

MergeDNA: Context-Aware Genome Modeling with Dynamic Tokenization Through Token Merging AAAI 2026
FedDNA: DNA Sequence Reconstruction via Deep Evidential Learning and Personalized Federated Aggregation AAAI 2026
TrinityDNA: A Bio-Inspired Foundational Model for Efficient Long-Sequence DNA Modeling AAAI 2026
Can Large Language Models Classify and Generate Antimicrobial Resistance Genes? ACL 2025
Biological Sequence Kernels with Guaranteed Flexibility JMLR 2025
GRAPE: Heterogeneous Graph Representation Learning for Genetic Perturbation with Coding and Non-Coding Biotype IJCAI 2025
Revisiting K-mer Profile for Effective and Scalable Genome Representation Learning NIPS 2024
Absorb & Escape: Overcoming Single Model Limitations in Generating Heterogeneous Genomic Sequences NIPS 2024
Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA NIPS 2024
HyenaDNA: Long-Range Genomic Sequence Modeling at Single Nucleotide Resolution NIPS 2023
Deep Squared Euclidean Approximation to the Levenshtein Distance for DNA Storage ICML 2022
Reverse-Complement Equivariant Networks for DNA Sequences NIPS 2021