biological sequence

RMSAGen: Integrating Multiple Sequence Alignment for Function RNA Design AAAI 2026 Biological Sequence Kernels with Guaranteed Flexibility JMLR 2025 Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models EMNLP 2025 Bio-xLSTM: Generative modeling, representation and in-context learning of biological and chemical sequences ICLR 2025 Can Large Language Models Classify and Generate Antimicrobial Resistance Genes? ACL 2025 Enhancing Antimicrobial Drug Resistance Classification by Integrating Sequence-Based and Text-Based Representations ACL 2025 Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design ICLR 2025 GFlowNet Assisted Biological Sequence Editing NeurIPS 2024 Multi-modal Transfer Learning between Biological Foundation Models NeurIPS 2024 Neural Embeddings for kNN Search in Biological Sequence AAAI 2024 A Kernelized Stein Discrepancy for Biological Sequences ICML 2023 Bootstrapped Training of Score-Conditioned Generator for Offline Design of Biological Sequences NeurIPS 2023 A Structured Observation Distribution for Generative Biological Sequence Prediction and Forecasting ICML 2021 Neural Distance Embeddings for Biological Sequences NeurIPS 2021 Recurrent Kernel Networks NeurIPS 2019 Active Clustering of Biological Sequences JMLR 2012 Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences JMLR 2012