conftrace_

protein sequence

27 papers

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Co-occurring keywords

protein language model (40) drug discovery (119) multi-modal learning (1278) transfer learning (5449) contrastive learning (4032) protein design (32) generative model (2892) protein structure (59) multi-task learning (2575) amino acid sequence (4)

Papers

S²Drug: Bridging Protein Sequence and 3D Structure in Contrastive Representation Learning for Virtual Screening AAAI 2026
TIGER: Text-Informed Generalized Enzyme-Reaction Retrieval ACL 2026
PatchET: Learning Enzyme Temperature Properties Through Patch-Based Neural Architectures AAAI 2026
Sequence-Free for Compound Protein Interaction Prediction AAAI 2026
FoldToken: Learning Protein Language via Vector Quantization and Beyond AAAI 2025
AutoProteinEngine: A Large Language Model Driven Agent Framework for Multimodal AutoML in Protein Engineering COLING 2025
Large Language and Protein Assistant for Protein-Protein Interactions Prediction ACL 2025
Rethinking Text-based Protein Understanding: Retrieval or LLM? EMNLP 2025
Biological Sequence Kernels with Guaranteed Flexibility JMLR 2025
PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction AAAI 2024
CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes NIPS 2024
Bridge-IF: Learning Inverse Protein Folding with Markov Bridges NIPS 2024
Multi-modal Transfer Learning between Biological Foundation Models NIPS 2024
Training Compute-Optimal Protein Language Models NIPS 2024
ProtT3: Protein-to-Text Generation for Text-based Protein Understanding ACL 2024
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning ACL 2024
Enhancing Transcription Factor Prediction through Multi-Task Learning (Student Abstract) AAAI 2024
Reprogramming Pretrained Language Models for Antibody Sequence Infilling ICML 2023
Multi-Modal Protein Knowledge Graph Construction and Applications (Student Abstract) AAAI 2023
AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions NIPS 2023
Hashing2Vec: Fast Embedding Generation for SARS-CoV-2 Spike Sequence Classification ACML 2022
PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding NIPS 2022
Biological Sequence Design with GFlowNets ICML 2022
An Interpretable Framework for Drug-Target Interaction with Gated Cross Attention MLHC 2021
Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design ICML 2021