protein design

Advancing Protein Design via Multi-Agent Reinforcement Learning with Pareto-Based Collaborative Optimization AAAI 2026 DS-ProGen: A Dual-Structure Deep Language Model for Functional Protein Design AAAI 2026 Efficient Protein Optimization via Structure-aware Hamiltonian Dynamics AAAI 2026 Controllable Protein Sequence Generation with LLM Preference Optimization AAAI 2025 Data Distillation for extrapolative protein design through exact preference optimization ICLR 2025 EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled Flow ICLR 2025 Fast Uncovering of Protein Sequence Diversity from Structure ICLR 2025 Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design ICLR 2025 Optimistic Games for Combinatorial Bayesian Optimization with Application to Protein Design ICLR 2025 ProtComposer: Compositional Protein Structure Generation with 3D Ellipsoids ICLR 2025 ProteinBench: A Holistic Evaluation of Protein Foundation Models ICLR 2025 Protein Large Language Models: A Comprehensive Survey EMNLP 2025 Retrieval Augmented Diffusion Model for Structure-informed Antibody Design and Optimization ICLR 2025 Reward-Guided Iterative Refinement in Diffusion Models at Test-Time with Applications to Protein and DNA Design ICML 2025 Training Free Guided Flow-Matching with Optimal Control ICLR 2025 Bridge-IF: Learning Inverse Protein Folding with Markov Bridges NeurIPS 2024 Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design ICML 2024 De novo Protein Design Using Geometric Vector Field Networks ICLR 2024 Designing Biological Sequences without Prior Knowledge Using Evolutionary Reinforcement Learning AAAI 2024 Design Proteins Using Large Language Models: Enhancements and Comparative Analyses ACL 2024 Dynamics-Informed Protein Design with Structure Conditioning ICLR 2024 Expected flow networks in stochastic environments and two-player zero-sum games ICLR 2024 Floating Anchor Diffusion Model for Multi-motif Scaffolding ICML 2024 Functional Graphical Models: Structure Enables Offline Data-Driven Optimization AISTATS 2024 Generating Highly Designable Proteins with Geometric Algebra Flow Matching NeurIPS 2024