conftrace_

protein language model

40 papers

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Also known as

PLM

Co-occurring keywords

multiple sequence alignment (18) protein structure (59) protein sequence (27) protein design (32) transfer learning (5449) representation learning (6206) protein function prediction (15) protein structure prediction (26) multi-modal learning (1278) self-supervised learning (3777)

Papers

Generalizable Drug–Target Interaction Prediction via ESM-2 Representations and Progressive Contrastive Curriculum Learning AAAI 2026
Advancing Protein Design via Multi-Agent Reinforcement Learning with Pareto-Based Collaborative Optimization AAAI 2026
ProtSAE: Disentangling and Interpreting Protein Language Models via Semantically-Guided Sparse Autoencoders AAAI 2026
LM2Protein: A Structure-to-Token Protein Large Language Model EMNLP 2025
VenusFactory: An Integrated System for Protein Engineering with Data Retrieval and Language Model Fine-Tuning ACL 2025
Accurate Nucleic Acid-Binding Residue Identification Based Domain-Adaptive Protein Language Model and Explainable Geometric Deep Learning AAAI 2025
Synergy of GFlowNet and Protein Language Model Makes a Diverse Antibody Designer AAAI 2025
FoldToken: Learning Protein Language via Vector Quantization and Beyond AAAI 2025
Enhancing Safe and Controllable Protein Generation via Knowledge Preference Optimization ACL 2025
Protein Large Language Models: A Comprehensive Survey EMNLP 2025
Bridge-IF: Learning Inverse Protein Folding with Markov Bridges NIPS 2024
DePLM: Denoising Protein Language Models for Property Optimization NIPS 2024
MutaPLM: Protein Language Modeling for Mutation Explanation and Engineering NIPS 2024
AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction NIPS 2024
MSA Generation with Seqs2Seqs Pretraining: Advancing Protein Structure Predictions NIPS 2024
Training Compute-Optimal Protein Language Models NIPS 2024
ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training ACL 2024
Retrieved Sequence Augmentation for Protein Representation Learning EMNLP 2024
InstructProtein: Aligning Human and Protein Language via Knowledge Instruction ACL 2024
ProtT3: Protein-to-Text Generation for Text-based Protein Understanding ACL 2024
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning ACL 2024
CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues AAAI 2024
Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Generation NIPS 2024
ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention NIPS 2024
MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins NIPS 2024