conftrace_

antibody design

15 papers

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Co-occurring keywords

protein structure (59) graph neural network (3962) molecular generation (78) equivariant neural network (75) protein language model (40) diffusion model (3751) generative model (2892) protein structure prediction (26) epitope prediction (3) sequence-structure co-design (2)

Papers

Dynamic Geometric Equivariant Network for Full-Atom Antibody Design AAAI 2026
dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen AAAI 2025
Generative Co-Design of Antibody Sequences and Structures via Black-Box Guidance in a Shared Latent Space IJCAI 2025
Synergy of GFlowNet and Protein Language Model Makes a Diverse Antibody Designer AAAI 2025
Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization AAAI 2025
Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization NIPS 2024
Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody Designer AAAI 2024
AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction NIPS 2024
AbDiffuser: full-atom generation of in-vitro functioning antibodies NIPS 2023
Reprogramming Pretrained Language Models for Antibody Sequence Infilling ICML 2023
End-to-End Full-Atom Antibody Design ICML 2023
A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design NIPS 2023
AbODE: Ab initio antibody design using conjoined ODEs ICML 2023
Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures NIPS 2022
Antibody-Antigen Docking and Design via Hierarchical Structure Refinement ICML 2022