conftrace_

multiple sequence alignment

18 papers

Explore in graph

Also known as

MSA

Co-occurring keywords

protein language model (40) protein structure prediction (26) self-supervised learning (3777) protein structure (59) biological sequence (15) generative model (2892) sequence alignment (30) knowledge distillation (3725) convex optimization (1321) transfer learning (5449)

Papers

RMSAGen: Integrating Multiple Sequence Alignment for Function RNA Design AAAI 2026
Beyond cognacy ACL 2025
G2PDiffusion: Cross-Species Genotype-to-Phenotype Prediction via Evolutionary Diffusion ICCV 2025
MSA Generation with Seqs2Seqs Pretraining: Advancing Protein Structure Predictions NIPS 2024
Retrieved Sequence Augmentation for Protein Representation Learning EMNLP 2024
MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training NIPS 2024
Ultrafast classical phylogenetic method beats large protein language models on variant effect prediction NIPS 2024
OpenProteinSet: Training data for structural biology at scale NIPS 2023
PoET: A generative model of protein families as sequences-of-sequences NIPS 2023
Contact-Distil: Boosting Low Homologous Protein Contact Map Prediction by Self-Supervised Distillation AAAI 2022
Exploring evolution-aware & -free protein language models as protein function predictors NIPS 2022
PSSM-Distil: Protein Secondary Structure Prediction (PSSP) on Low-Quality PSSM by Knowledge Distillation with Contrastive Learning AAAI 2021
Co-evolution Transformer for Protein Contact Prediction NIPS 2021
MSA Transformer ICML 2021
A Structured Observation Distribution for Generative Biological Sequence Prediction and Forecasting ICML 2021
Scalable Convex Multiple Sequence Alignment via Entropy-Regularized Dual Decomposition AISTATS 2017
A Convex Atomic-Norm Approach to Multiple Sequence Alignment and Motif Discovery ICML 2016
Variational Inference over Combinatorial Spaces NIPS 2010