protein function prediction

Interleaved Tool-Call Reasoning for Protein Function Understanding ACL 2026 Enhancing Multimodal Protein Function Prediction Through Dual-Branch Dynamic Selection with Reconstructive Pre-Training IJCAI 2025 GLProtein: Global-and-Local Structure Aware Protein Representation Learning EMNLP 2025 GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction AAAI 2025 ProtCLIP: Function-Informed Protein Multi-Modal Learning AAAI 2025 InstructProtein: Aligning Human and Protein Language via Knowledge Instruction ACL 2024 Learning Complete Protein Representation by Dynamically Coupling of Sequence and Structure NeurIPS 2024 ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention NeurIPS 2024 Prot2Text: Multimodal Protein’s Function Generation with GNNs and Transformers AAAI 2024 SciMind: A Multimodal Mixture-of-Experts Model for Advancing Pharmaceutical Sciences ACL 2024 Multi-level Protein Structure Pre-training via Prompt Learning ICLR 2023 Multi-Modal Protein Knowledge Graph Construction and Applications (Student Abstract) AAAI 2023 Exploring evolution-aware & -free protein language models as protein function predictors NeurIPS 2022 OntoProtein: Protein Pretraining With Gene Ontology Embedding ICLR 2022 PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding NeurIPS 2022 Multi-Scale Representation Learning on Proteins NeurIPS 2021 Hierarchical Multi-Label Classification Networks ICML 2018