protein language model

Bridge-IF: Learning Inverse Protein Folding with Markov Bridges NeurIPS 2024 CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model ICML 2024 CrossBind: Collaborative Cross-Modal Identification of Protein Nucleic-Acid-Binding Residues AAAI 2024 DePLM: Denoising Protein Language Models for Property Optimization NeurIPS 2024 ESM All-Atom: Multi-Scale Protein Language Model for Unified Molecular Modeling ICML 2024 Feature Reuse and Scaling: Understanding Transfer Learning with Protein Language Models ICML 2024 InstructProtein: Aligning Human and Protein Language via Knowledge Instruction ACL 2024 Knowledge-aware Reinforced Language Models for Protein Directed Evolution ICML 2024 MMSite: A Multi-modal Framework for the Identification of Active Sites in Proteins NeurIPS 2024 MSA Generation with Seqs2Seqs Pretraining: Advancing Protein Structure Predictions NeurIPS 2024 Multi-Scale Representation Learning for Protein Fitness Prediction NeurIPS 2024 MutaPLM: Protein Language Modeling for Mutation Explanation and Engineering NeurIPS 2024 ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention NeurIPS 2024 ProtLLM: An Interleaved Protein-Language LLM with Protein-as-Word Pre-Training ACL 2024 ProtT3: Protein-to-Text Generation for Text-based Protein Understanding ACL 2024 Retrieved Sequence Augmentation for Protein Representation Learning EMNLP 2024 Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space ICML 2024 SaProt: Protein Language Modeling with Structure-aware Vocabulary ICLR 2024 Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Generation NeurIPS 2024 Training Compute-Optimal Protein Language Models NeurIPS 2024 Ultrafast classical phylogenetic method beats large protein language models on variant effect prediction NeurIPS 2024 A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design NeurIPS 2023 Matching receptor to odorant with protein language and graph neural networks ICLR 2023 On Pre-training Language Model for Antibody ICLR 2023 PoET: A generative model of protein families as sequences-of-sequences NeurIPS 2023