conftrace_

protein language model

40 papers

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Also known as

PLM

Co-occurring keywords

multiple sequence alignment (18) protein structure (59) protein sequence (27) protein design (32) transfer learning (5449) representation learning (6206) protein function prediction (15) protein structure prediction (26) multi-modal learning (1278) self-supervised learning (3777)

Papers

Multi-Scale Representation Learning for Protein Fitness Prediction NIPS 2024
A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models NIPS 2024
Approximating mutual information of high-dimensional variables using learned representations NIPS 2024
Ultrafast classical phylogenetic method beats large protein language models on variant effect prediction NIPS 2024
A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design NIPS 2023
ProtST: Multi-Modality Learning of Protein Sequences and Biomedical Texts ICML 2023
Structure-informed Language Models Are Protein Designers ICML 2023
PoET: A generative model of protein families as sequences-of-sequences NIPS 2023
Contact-Distil: Boosting Low Homologous Protein Contact Map Prediction by Self-Supervised Distillation AAAI 2022
Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval ICML 2022
PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding NIPS 2022
Exploring evolution-aware & -free protein language models as protein function predictors NIPS 2022
Language models enable zero-shot prediction of the effects of mutations on protein function NIPS 2021
PSSM-Distil: Protein Secondary Structure Prediction (PSSP) on Low-Quality PSSM by Knowledge Distillation with Contrastive Learning AAAI 2021
MSA Transformer ICML 2021