protein language model

Advancing Protein Design via Multi-Agent Reinforcement Learning with Pareto-Based Collaborative Optimization AAAI 2026 Generalizable Drug–Target Interaction Prediction via ESM-2 Representations and Progressive Contrastive Curriculum Learning AAAI 2026 Multimodal Protein Language Models for Enzyme Kinetic Parameters: From Substrate Recognition to Conformational Adaptation CVPR 2026 ProtSAE: Disentangling and Interpreting Protein Language Models via Semantically-Guided Sparse Autoencoders AAAI 2026 Accurate Nucleic Acid-Binding Residue Identification Based Domain-Adaptive Protein Language Model and Explainable Geometric Deep Learning AAAI 2025 Concept Bottleneck Language Models For Protein Design ICLR 2025 Diffusion on Language Model Encodings for Protein Sequence Generation ICML 2025 Enhancing Safe and Controllable Protein Generation via Knowledge Preference Optimization ACL 2025 FoldToken: Learning Protein Language via Vector Quantization and Beyond AAAI 2025 From Mechanistic Interpretability to Mechanistic Biology: Training, Evaluating, and Interpreting Sparse Autoencoders on Protein Language Models ICML 2025 Learning to engineer protein flexibility ICLR 2025 LM2Protein: A Structure-to-Token Protein Large Language Model EMNLP 2025 Metalic: Meta-Learning In-Context with Protein Language Models ICLR 2025 Multi-objective antibody design with constrained preference optimization ICLR 2025 Protein Language Model Fitness is a Matter of Preference ICLR 2025 Protein Large Language Models: A Comprehensive Survey EMNLP 2025 Retrieval-Augmented Language Model for Knowledge-aware Protein Encoding ICML 2025 Steering Masked Discrete Diffusion Models via Discrete Denoising Posterior Prediction ICLR 2025 Steering Protein Language Models ICML 2025 Synergy of GFlowNet and Protein Language Model Makes a Diverse Antibody Designer AAAI 2025 VenusFactory: An Integrated System for Protein Engineering with Data Retrieval and Language Model Fine-Tuning ACL 2025 Approximating mutual information of high-dimensional variables using learned representations NeurIPS 2024 A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models NeurIPS 2024 AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction NeurIPS 2024 BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning ACL 2024