protein sequence

Training Compute-Optimal Protein Language Models NeurIPS 2024 AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions NeurIPS 2023 Multi-Modal Protein Knowledge Graph Construction and Applications (Student Abstract) AAAI 2023 Reprogramming Pretrained Language Models for Antibody Sequence Infilling ICML 2023 Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder ICLR 2022 Biological Sequence Design with GFlowNets ICML 2022 Hashing2Vec: Fast Embedding Generation for SARS-CoV-2 Spike Sequence Classification ACML 2022 PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding NeurIPS 2022 An Interpretable Framework for Drug-Target Interaction with Gated Cross Attention MLHC 2021 Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design ICML 2021 Learning protein sequence embeddings using information from structure ICLR 2019 Predicting the Geometry of Metal Binding Sites from Protein Sequence NeurIPS 2008 Fast String Kernels using Inexact Matching for Protein Sequences JMLR 2004