single-cell analysis

CLM-Access: A Specialized Foundation Model for High-Dimensional Single-Cell ATAC-Seq Analysis AAAI 2026 Uni-Hema: Unified Model for Digital Hematopathology CVPR 2026 Cradle-VAE: Enhancing Single-Cell Gene Perturbation Modeling with Counterfactual Reasoning-based Artifact Disentanglement AAAI 2025 Learning Cross-Domain Representations for Transferable Drug Perturbations on Single-Cell Transcriptional Responses AAAI 2025 scRAG: Hybrid Retrieval-Augmented Generation for LLM-based Cross-Tissue Single-Cell Annotation ACL 2025 Spatial Coordinates as a Cell Language: A Multi-Sentence Framework for Imaging Mass Cytometry Analysis ACL 2025 A versatile informative diffusion model for single-cell ATAC-seq data generation and analysis NeurIPS 2024 Cell ontology guided transcriptome foundation model NeurIPS 2024 Comprehensive View Embedding Learning for Single-Cell Multimodal Integration AAAI 2024 Semi-supervised Knowledge Transfer Across Multi-omic Single-cell Data NeurIPS 2024 Unsupervised Deep Embedded Fusion Representation of Single-Cell Transcriptomics AAAI 2023 Granger causal inference on DAGs identifies genomic loci regulating transcription ICLR 2022 Variational Mixtures of ODEs for Inferring Cellular Gene Expression Dynamics ICML 2022 Diffusion Earth Mover’s Distance and Distribution Embeddings ICML 2021 Weakly Supervised Learning of Single-Cell Feature Embeddings CVPR 2018