Tree Shape Priors with Connectivity Constraints Using Convex Relaxation on General Graphs

We propose a novel method to include a connectivity prior into image segmentation that is based on a binary labeling of a directed graph, in this case a geodesic shortest path tree. Specifically we make two contributions: First, we construct a geodesic shortest path tree with a distance measure that is related to the image data and the bending energy of each path in the tree. Second, we include a connectivity prior in our segmentation model, that allows to segment not only a single elongated structure, but instead a whole connected branching tree. Because both our segmentation model and the connectivity constraint are convex, a global optimal solution can be found. To this end, we generalize a recent primal-dual algorithm for continuous convex optimization to an arbitrary graph structure. To validate our method we present results on data from medical imaging in angiography and retinal blood vessel segmentation.