Research

Assay2Mol: Large Language Model-based Drug Design Using BioAssay Context EMNLP 2025 Assessing the Impact of Population Data Domain Differences on Transfer Learning in P300-based Brain-Computer Interfaces (Student Abstract) AAAI 2025 Assessing the Reliability and Validity of GPT-4 in Annotating Emotion Appraisal Ratings NAACL 2025 Association Pattern-enhanced Molecular Representation Learning AAAI 2025 A Survey on Foundation Language Models for Single-cell Biology ACL 2025 A Unified Framework for Human-Allied Learning of Probabilistic Circuits AAAI 2025 Automatic Annotation Augmentation Boosts Translation between Molecules and Natural Language NAACL 2025 AutoProteinEngine: A Large Language Model Driven Agent Framework for Multimodal AutoML in Protein Engineering COLING 2025 BAnG: Bidirectional Anchored Generation for Conditional RNA Design ICML 2025 Benchmarking zero-shot biomedical relation triplet extraction across language model architectures ACL 2025 Beyond Atoms: Enhancing Molecular Pretrained Representations with 3D Space Modeling ICML 2025 Beyond Sensor Data: Foundation Models of Behavioral Data from Wearables Improve Health Predictions ICML 2025 Beyond Sequence: Impact of Geometric Context for RNA Property Prediction ICLR 2025 BioGraphia: A LLM-Assisted Biological Pathway Graph Annotation Platform EMNLP 2025 BioHopR: A Benchmark for Multi-Hop, Multi-Answer Reasoning in Biomedical Domain ACL 2025 Biological Sequence Kernels with Guaranteed Flexibility JMLR 2025 Biology-Instructions: A Dataset and Benchmark for Multi-Omics Sequence Understanding Capability of Large Language Models EMNLP 2025 BIOPSY - Biomarkers In Oncology: Pipeline for Structured Yielding EMNLP 2025 Blood Flow Speed Estimation with Optical Coherence Tomography Angiography Images CVPR 2025 BOE-ViT: Boosting Orientation Estimation with Equivariance in Self-Supervised 3D Subtomogram Alignment CVPR 2025 BounDr.E: Predicting Drug-likeness via Biomedical Knowledge Alignment and EM-like One-Class Boundary Optimization ICML 2025 BrainECHO: Semantic Brain Signal Decoding through Vector-Quantized Spectrogram Reconstruction for Whisper-Enhanced Text Generation ACL 2025 BrainMAP: Learning Multiple Activation Pathways in Brain Networks AAAI 2025 Bridging the Gap between Database Search and \emph{De Novo} Peptide Sequencing with SearchNovo ICLR 2025 Bridging the Gap between Learning and Inference for Diffusion-Based Molecule Generation ACML 2025