Research

GoBERT: Gene Ontology Graph Informed BERT for Universal Gene Function Prediction AAAI 2025 GRAPE: Heterogeneous Graph Representation Learning for Genetic Perturbation with Coding and Non-Coding Biotype IJCAI 2025 GraphTranslate: Predicting Clinical Trial Translation using Graph Neural Networks on Biomedical Literature ACL 2025 GraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration NAACL 2025 GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models ACL 2025 Heart Rate as a Proxy Measure to Assess Human Confidence in Spoken Speech Interspeech 2025 HeMeNet: Heterogeneous Multichannel Equivariant Network for Protein Multi-task Learning AAAI 2025 HHAN: Comprehensive Infectious Disease Source Tracing via Heterogeneous Hypergraph Neural Network AAAI 2025 Hierarchical Gradient-Based Genetic Sampling for Accurate Prediction of Biological Oscillations AAAI 2025 Hotspot-Driven Peptide Design via Multi-Fragment Autoregressive Extension ICLR 2025 How to Make Large Language Models Generate 100% Valid Molecules? EMNLP 2025 How To Make Your Cell Tracker Say "I dunno!" ICCV 2025 Human-Aligned Image Models Improve Visual Decoding from the Brain ICML 2025 Improving Cancer Gene Prediction by Enhancing Common Information Between the PPI Network and Gene Functional Association AAAI 2025 InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference ICML 2025 Integrating Biological Knowledge for Robust Microscopy Image Profiling on De Novo Cell Lines ICCV 2025 J-Invariant Volume Shuffle for Self-Supervised Cryo-Electron Tomogram Denoising on Single Noisy Volume WACV 2025 KinDEL: DNA-Encoded Library Dataset for Kinase Inhibitors ICML 2025 Knowledge-Guided Domain Adaptation Model for Transferring Drug Response Prediction from Cell Lines to Patients AAAI 2025 Learning Cross-Domain Representations for Transferable Drug Perturbations on Single-Cell Transcriptional Responses AAAI 2025 Learning from Negative Samples in Biomedical Generative Entity Linking ACL 2025 Learning Time-Varying Multi-Region Brain Communications via Scalable Markovian Gaussian Processes ICML 2025 LIDDIA: Language-based Intelligent Drug Discovery Agent EMNLP 2025 ListenNet: A Lightweight Spatio-Temporal Enhancement Nested Network for Auditory Attention Detection IJCAI 2025 M²N: A Progressive Macro-to-Micro 3D Modeling Scheme for Unveiling Drug-Target Affinity AAAI 2025