Bioinformatics

Improving Paratope and Epitope Prediction by Multi-Modal Contrastive Learning and Interaction Informativeness Estimation IJCAI 2024 InstructProtein: Aligning Human and Protein Language via Knowledge Instruction ACL 2024 IST-editing: Infinite spatial transcriptomic editing in a generated gigapixel mouse pup MIDL 2024 Kermut: Composite kernel regression for protein variant effects NeurIPS 2024 Kernel-Based Evaluation of Conditional Biological Sequence Models ICML 2024 Knowledge Enhanced Representation Learning for Drug Discovery AAAI 2024 Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps ECCV 2024 Learned morphological features guide cell type assignment of deconvolved spatial transcriptomics MIDL 2024 Learning High-Order Relationships of Brain Regions ICML 2024 Learning Multimodal Volumetric Features for Large-Scale Neuron Tracing AAAI 2024 Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning ICML 2024 Levenshtein Distance Embedding with Poisson Regression for DNA Storage AAAI 2024 LUWA Dataset: Learning Lithic Use-Wear Analysis on Microscopic Images CVPR 2024 MapLE: Matching Molecular Analogues Promptly with Low Computational Resources by Multi-Metrics Evaluation (Student Abstract) AAAI 2024 Masked Autoencoders for Microscopy are Scalable Learners of Cellular Biology CVPR 2024 MetaRLEC: Meta-Reinforcement Learning for Discovery of Brain Effective Connectivity AAAI 2024 Mixed Models with Multiple Instance Learning AISTATS 2024 Mixture of neural fields for heterogeneous reconstruction in cryo-EM NeurIPS 2024 MKG-FENN: A Multimodal Knowledge Graph Fused End-to-End Neural Network for Accurate Drug–Drug Interaction Prediction AAAI 2024 Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA NeurIPS 2024 MolTailor: Tailoring Chemical Molecular Representation to Specific Tasks via Text Prompts AAAI 2024 MP-RNA: Unleashing Multi-species RNA Foundation Model via Calibrated Secondary Structure Prediction EMNLP 2024 MSA Generation with Seqs2Seqs Pretraining: Advancing Protein Structure Predictions NeurIPS 2024 Multi-Granularity Causal Structure Learning AAAI 2024 Multi-modal Transfer Learning between Biological Foundation Models NeurIPS 2024