Bioinformatics

Antibody-Antigen Docking and Design via Hierarchical Structure Refinement ICML 2022 BanglaBioMed: A Biomedical Named-Entity Annotated Corpus for Bangla (Bengali) ACL 2022 Bayesian Multinomial Logistic Normal Models through Marginally Latent Matrix-T Processes JMLR 2022 BEEDS: Large-Scale Biomedical Event Extraction using Distant Supervision and Question Answering ACL 2022 Beyond Data Samples: Aligning Differential Networks Estimation with Scientific Knowledge AISTATS 2022 BigBio: A Framework for Data-Centric Biomedical Natural Language Processing NeurIPS 2022 BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model ACL 2022 Biological Sequence Design with GFlowNets ICML 2022 BioLORD: Learning Ontological Representations from Definitions for Biomedical Concepts and their Textual Descriptions EMNLP 2022 Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework EMNLP 2022 BioSimCSE: BioMedical Sentence Embeddings using Contrastive learning EMNLP 2022 CausalGNN: Causal-Based Graph Neural Networks for Spatio-Temporal Epidemic Forecasting AAAI 2022 CellTypeGraph: A New Geometric Computer Vision Benchmark CVPR 2022 Contact-Distil: Boosting Low Homologous Protein Contact Map Prediction by Self-Supervised Distillation AAAI 2022 Deep Squared Euclidean Approximation to the Levenshtein Distance for DNA Storage ICML 2022 De novo mass spectrometry peptide sequencing with a transformer model ICML 2022 Document-level Biomedical Relation Extraction Based on Multi-Dimensional Fusion Information and Multi-Granularity Logical Reasoning COLING 2022 Estimating graphical models for count data with applications to single-cell gene network NeurIPS 2022 Evaluating Biomedical Word Embeddings for Vocabulary Alignment at Scale in the UMLS Metathesaurus Using Siamese Networks ACL 2022 FuDGE: A Method to Estimate a Functional Differential Graph in a High-Dimensional Setting JMLR 2022 GeneDisco: A Benchmark for Experimental Design in Drug Discovery ICLR 2022 GeomGCL: Geometric Graph Contrastive Learning for Molecular Property Prediction AAAI 2022 Hashing2Vec: Fast Embedding Generation for SARS-CoV-2 Spike Sequence Classification ACML 2022 Improving Biomedical Information Retrieval with Neural Retrievers AAAI 2022 Improving Romanian BioNER Using a Biologically Inspired System ACL 2022