Bioinformatics

InfoSEM: A Deep Generative Model with Informative Priors for Gene Regulatory Network Inference ICML 2025 Integrating Biological Knowledge for Robust Microscopy Image Profiling on De Novo Cell Lines ICCV 2025 J-Invariant Volume Shuffle for Self-Supervised Cryo-Electron Tomogram Denoising on Single Noisy Volume WACV 2025 KinDEL: DNA-Encoded Library Dataset for Kinase Inhibitors ICML 2025 Knowledge-Guided Domain Adaptation Model for Transferring Drug Response Prediction from Cell Lines to Patients AAAI 2025 Learning Cross-Domain Representations for Transferable Drug Perturbations on Single-Cell Transcriptional Responses AAAI 2025 Learning from Negative Samples in Biomedical Generative Entity Linking ACL 2025 LIDDIA: Language-based Intelligent Drug Discovery Agent EMNLP 2025 M²N: A Progressive Macro-to-Micro 3D Modeling Scheme for Unveiling Drug-Target Affinity AAAI 2025 M2OST: Many-to-one Regression for Predicting Spatial Transcriptomics from Digital Pathology Images AAAI 2025 MetninOzU at BioLaySumm2025: Text Summarization with Reverse Data Augmentation and Injecting Salient Sentences ACL 2025 MicroVQA: A Multimodal Reasoning Benchmark for Microscopy-Based Scientific Research CVPR 2025 MolHFCNet: Enhancing Molecular Graph Representations with Hierarchical Feature Combining and Hybrid Pretraining IJCAI 2025 MolRAG: Unlocking the Power of Large Language Models for Molecular Property Prediction ACL 2025 Motif-Oriented Representation Learning with Topology Refinement for Drug-Drug Interaction Prediction AAAI 2025 mRNA2vec: mRNA Embedding with Language Model in the 5'UTR-CDS for mRNA Design AAAI 2025 MTGIB-UNet: A Multi-Task Graph Information Bottleneck and Uncertainty Weighted Network for ADMET Prediction IJCAI 2025 MuCoS: Efficient Drug–Target Discovery via Multi-Context-Aware Sampling in Knowledge Graphs ACL 2025 Multi-marginal Schrödinger Bridges with Iterative Reference Refinement AISTATS 2025 Multimodal Lego: Model Merging and Fine-Tuning Across Topologies and Modalities in Biomedicine ICLR 2025 MultiMorph: On-demand Atlas Construction CVPR 2025 Multi-Omics Analysis for Cancer Subtype Inference via Unrolling Graph Smoothness Priors IJCAI 2025 Neuron Platonic Intrinsic Representation From Dynamics Using Contrastive Learning ICLR 2025 Overcoming Data Scarcity in Named Entity Recognition: Synthetic Data Generation with Large Language Models ACL 2025 P(all-atom) Is Unlocking New Path For Protein Design ICML 2025