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Bioinformatics

638 directly classified papers

Papers per year

Papers

Optimal Design of Stochastic DNA Synthesis Protocols based on Generative Sequence Models AISTATS 2022
Beyond Data Samples: Aligning Differential Networks Estimation with Scientific Knowledge AISTATS 2022
SNP2Vec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study ACL 2022
Joint Estimation and Inference for Data Integration Problems based on Multiple Multi-layered Gaussian Graphical Models JMLR 2022
FuDGE: A Method to Estimate a Functional Differential Graph in a High-Dimensional Setting JMLR 2022
A Nonconvex Framework for Structured Dynamic Covariance Recovery JMLR 2022
Learning Temporal Evolution of Spatial Dependence with Generalized Spatiotemporal Gaussian Process Models JMLR 2022
Variational Mixtures of ODEs for Inferring Cellular Gene Expression Dynamics ICML 2022
One-Pass Diversified Sampling with Application to Terabyte-Scale Genomic Sequence Streams ICML 2022
CausalGNN: Causal-Based Graph Neural Networks for Spatio-Temporal Epidemic Forecasting AAAI 2022
Improving Biomedical Information Retrieval with Neural Retrievers AAAI 2022
Self-Supervised Pre-training for Protein Embeddings Using Tertiary Structures AAAI 2022
Deep Squared Euclidean Approximation to the Levenshtein Distance for DNA Storage ICML 2022
Biological Sequence Design with GFlowNets ICML 2022
Antibody-Antigen Docking and Design via Hierarchical Structure Refinement ICML 2022
Proximal Exploration for Model-guided Protein Sequence Design ICML 2022
Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoders ICML 2022
Retroformer: Pushing the Limits of End-to-end Retrosynthesis Transformer ICML 2022
De novo mass spectrometry peptide sequencing with a transformer model ICML 2022
Molecular Representation Learning via Heterogeneous Motif Graph Neural Networks ICML 2022
GeomGCL: Geometric Graph Contrastive Learning for Molecular Property Prediction AAAI 2022
Contact-Distil: Boosting Low Homologous Protein Contact Map Prediction by Self-Supervised Distillation AAAI 2022
ZINB-Based Graph Embedding Autoencoder for Single-Cell RNA-Seq Interpretations AAAI 2022
6DCNN with Roto-Translational Convolution Filters for Volumetric Data Processing AAAI 2022
KenMeSH: Knowledge-enhanced End-to-end Biomedical Text Labelling ACL 2022