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Bioinformatics

638 directly classified papers

Papers per year

Papers

BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model ACL 2022
Inter-annotator agreement is not the ceiling of machine learning performance: Evidence from a comprehensive set of simulations ACL 2022
BEEDS: Large-Scale Biomedical Event Extraction using Distant Supervision and Question Answering ACL 2022
Estimating graphical models for count data with applications to single-cell gene network NIPS 2022
ToDD: Topological Compound Fingerprinting in Computer-Aided Drug Discovery NIPS 2022
Longitudinal Deep Kernel Gaussian Process Regression AAAI 2021
Gaining Insight into SARS-CoV-2 Infection and COVID-19 Severity Using Self-supervised Edge Features and Graph Neural Networks AAAI 2021
PANTHER: Pathway Augmented Nonnegative Tensor Factorization for HighER-order Feature Learning AAAI 2021
Relational Classification of Biological Cells in Microscopy Images AAAI 2021
Estimation and Inference for High Dimensional Generalized Linear Models: A Splitting and Smoothing Approach JMLR 2021
PSSM-Distil: Protein Secondary Structure Prediction (PSSP) on Low-Quality PSSM by Knowledge Distillation with Contrastive Learning AAAI 2021
Fast End-to-End Learning on Protein Surfaces CVPR 2021
Gene Regulatory Network Inference using 3D Convolutional Neural Network AAAI 2021
Structure Learning of Undirected Graphical Models for Count Data JMLR 2021
Improving Molecular Graph Neural Network Explainability with Orthonormalization and Induced Sparsity ICML 2021
Effective Clustering of scRNA-seq Data to Identify Biomarkers without User Input AAAI 2021
Neural Pharmacodynamic State Space Modeling ICML 2021
Disentangling syntax and semantics in the brain with deep networks ICML 2021
Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design ICML 2021
Graphine: A Dataset for Graph-aware Terminology Definition Generation EMNLP 2021
Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction IJCAI 2021
Neural Distance Embeddings for Biological Sequences NIPS 2021
Integrated Principal Components Analysis JMLR 2021
High Frequent In-domain Words Segmentation and Forward Translation for the WMT21 Biomedical Task EMNLP 2021
Scaling up Continuous-Time Markov Chains Helps Resolve Underspecification NIPS 2021