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Bioinformatics

250 papers

Papers per year

5
1
15
47
'10
'15
'20
'25

Papers

SWAMamba: A Sliding Window Attention Mamba Framework for Predicting Translation Elongation Rates AAAI 2025
mRNA2vec: mRNA Embedding with Language Model in the 5'UTR-CDS for mRNA Design AAAI 2025
Motif-Oriented Representation Learning with Topology Refinement for Drug-Drug Interaction Prediction AAAI 2025
Exploit Your Latents: Coarse-Grained Protein Backmapping with Latent Diffusion Models AAAI 2025
GDiffRetro: Retrosynthesis Prediction with Dual Graph Enhanced Molecular Representation and Diffusion Generation AAAI 2025
Rethinking Cancer Gene Identification Through Graph Anomaly Analysis AAAI 2025
SpotDiff: Spatial Gene Expression Imputation Diffusion with Single-Cell RNA Sequencing Data Integration AAAI 2025
Pre-Training Graph Neural Networks on Molecules by Using Subgraph-Conditioned Graph Information Bottleneck AAAI 2025
R-DTI: Drug Target Interaction Prediction Based on Second-Order Relevance Exploration AAAI 2025
Association Pattern-enhanced Molecular Representation Learning AAAI 2025
Learning Disentangled Equivariant Representation for Explicitly Controllable 3D Molecule Generation AAAI 2025
Multi-Objective Molecular Design Through Learning Latent Pareto Set AAAI 2025
Bridging Sequence-Structure Alignment in RNA Foundation Models AAAI 2025
Synergy of GFlowNet and Protein Language Model Makes a Diverse Antibody Designer AAAI 2025
Blend the Separated: Mixture of Synergistic Experts for Data-Scarcity Drug-Target Interaction Prediction AAAI 2025
nach0-pc: Multi-task Language Model with Molecular Point Cloud Encoder AAAI 2025
Identifying Cellular Niches in Spatial Transcriptomics: An Investigation into the Capabilities of Large Language Models ACL 2025
Enhancing Safe and Controllable Protein Generation via Knowledge Preference Optimization ACL 2025
Boosting LLM’s Molecular Structure Elucidation with Knowledge Enhanced Tree Search Reasoning ACL 2025
VenusFactory: An Integrated System for Protein Engineering with Data Retrieval and Language Model Fine-Tuning ACL 2025
Accelerating Antibiotic Discovery with Large Language Models and Knowledge Graphs ACL 2025
Large Language Models in Bioinformatics: A Survey ACL 2025
GRNFormer: A Biologically-Guided Framework for Integrating Gene Regulatory Networks into RNA Foundation Models ACL 2025
Can Large Language Models Classify and Generate Antimicrobial Resistance Genes? ACL 2025
Enhancing Antimicrobial Drug Resistance Classification by Integrating Sequence-Based and Text-Based Representations ACL 2025