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Interdisciplinary › Science ›

Bioinformatics

250 papers

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Papers

MuCoS: Efficient Drug–Target Discovery via Multi-Context-Aware Sampling in Knowledge Graphs ACL 2025

Virtual CRISPR: Can LLMs Predict CRISPR Screen Results? ACL 2025

Rethinking Text-based Protein Understanding: Retrieval or LLM? EMNLP 2025

How to Make Large Language Models Generate 100% Valid Molecules? EMNLP 2025

Assay2Mol: Large Language Model-based Drug Design Using BioAssay Context EMNLP 2025

BioGraphia: A LLM-Assisted Biological Pathway Graph Annotation Platform EMNLP 2025

MagNet: Multi-Level Attention Graph Network for Predicting High-Resolution Spatial Transcriptomics MIDL 2025

ReactZyme: A Benchmark for Enzyme-Reaction Prediction NIPS 2024

SubgDiff: A Subgraph Diffusion Model to Improve Molecular Representation Learning NIPS 2024

Neural Network Reparametrization for Accelerated Optimization in Molecular Simulations NIPS 2024

FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning NIPS 2024

ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention NIPS 2024

MSAGPT: Neural Prompting Protein Structure Prediction via MSA Generative Pre-Training NIPS 2024

Generalized Protein Pocket Generation with Prior-Informed Flow Matching NIPS 2024

Bridge-IF: Learning Inverse Protein Folding with Markov Bridges NIPS 2024

RGFN: Synthesizable Molecular Generation Using GFlowNets NIPS 2024

Exploring Molecular Pretraining Model at Scale NIPS 2024

Expert-level protocol translation for self-driving labs NIPS 2024

Enhancing Protein Mutation Effect Prediction through a Retrieval-Augmented Framework NIPS 2024

WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking NIPS 2024

CryoSPIN: Improving Ab-Initio Cryo-EM Reconstruction with Semi-Amortized Pose Inference NIPS 2024

Mixture of neural fields for heterogeneous reconstruction in cryo-EM NIPS 2024

DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA NIPS 2024

CryoGEM: Physics-Informed Generative Cryo-Electron Microscopy NIPS 2024

Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA NIPS 2024