Bioinformatics

Modular Flows: Differential Molecular Generation NeurIPS 2022 Multilingual Molecular Representation Learning via Contrastive Pre-training ACL 2022 OpenFWI: Large-scale Multi-structural Benchmark Datasets for Full Waveform Inversion NeurIPS 2022 PROSPECT: Labeled Tandem Mass Spectrometry Dataset for Machine Learning in Proteomics NeurIPS 2022 Regularized Molecular Conformation Fields NeurIPS 2022 Sample Efficiency Matters: A Benchmark for Practical Molecular Optimization NeurIPS 2022 Sampling with Riemannian Hamiltonian Monte Carlo in a Constrained Space NeurIPS 2022 Spherical Channels for Modeling Atomic Interactions NeurIPS 2022 TANKBind: Trigonometry-Aware Neural NetworKs for Drug-Protein Binding Structure Prediction NeurIPS 2022 Textomics: A Dataset for Genomics Data Summary Generation ACL 2022 ZINB-Based Graph Embedding Autoencoder for Single-Cell RNA-Seq Interpretations AAAI 2022 A Fine-Grained Annotated Corpus for Target-Based Opinion Analysis of Economic and Financial Narratives EMNLP 2021 BERTology Meets Biology: Interpreting Attention in Protein Language Models ICLR 2021 ChemNER: Fine-Grained Chemistry Named Entity Recognition with Ontology-Guided Distant Supervision EMNLP 2021 Co-evolution Transformer for Protein Contact Prediction NeurIPS 2021 Combining Machine Learning & Reasoning for Biodiversity Data Intelligence AAAI 2021 Directional Message Passing on Molecular Graphs via Synthetic Coordinates NeurIPS 2021 EeLISA: Combating Global Warming Through the Rapid Analysis of Eelgrass Wasting Disease AAAI 2021 GeoMol: Torsional Geometric Generation of Molecular 3D Conformer Ensembles NeurIPS 2021 Learning of Structurally Unambiguous Probabilistic Grammars AAAI 2021 MIMOSA: Multi-constraint Molecule Sampling for Molecule Optimization AAAI 2021 Motif-based Graph Self-Supervised Learning for Molecular Property Prediction NeurIPS 2021 Multi-Scale Representation Learning on Proteins NeurIPS 2021 Ontology-Enriched Query Answering on Relational Databases AAAI 2021 PANTHER: Pathway Augmented Nonnegative Tensor Factorization for HighER-order Feature Learning AAAI 2021