biomedical entity

AdaBioBERT: Adaptive Token Sequence Learning for Biomedical Named Entity Recognition ACL 2025 Effective Multi-Task Learning for Biomedical Named Entity Recognition ACL 2025 Shared Task at Biolaysumm2025 : Extract then summarize approach Augmented with UMLS based Definition Retrieval for Lay Summary generation. ACL 2025 Biomedical Entity Representation with Graph-Augmented Multi-Objective Transformer NAACL 2024 Extracting Biomedical Entities from Noisy Audio Transcripts COLING 2024 TOPICAL: TOPIC Pages AutomagicaLly NAACL 2024 DICE: Data-Efficient Clinical Event Extraction with Generative Models ACL 2023 UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition ACL 2023 A Domain Knowledge Enhanced Pre-Trained Language Model for Vertical Search: Case Study on Medicinal Products COLING 2022 Entity Linking via Explicit Mention-Mention Coreference Modeling NAACL 2022 Named Entity Recognition for Cancer Immunology Research Using Distant Supervision ACL 2022 The SocialDisNER shared task on detection of disease mentions in health-relevant content from social media: methods, evaluation, guidelines and corpora COLING 2022 SAFFRON: tranSfer leArning For Food-disease RelatiOn extractioN NAACL 2021 Self-Alignment Pretraining for Biomedical Entity Representations NAACL 2021 A Generate-and-Rank Framework with Semantic Type Regularization for Biomedical Concept Normalization ACL 2020 Enhancing Clinical BERT Embedding using a Biomedical Knowledge Base COLING 2020 ERLKG: Entity Representation Learning and Knowledge Graph based association analysis of COVID-19 through mining of unstructured biomedical corpora EMNLP 2020 LATTE: Latent Type Modeling for Biomedical Entity Linking AAAI 2020 Learning Informative Representations of Biomedical Relations with Latent Variable Models EMNLP 2020 SciSight: Combining faceted navigation and research group detection for COVID-19 exploratory scientific search EMNLP 2020 A Multi-Platform Annotation Ecosystem for Domain Adaptation ACL 2019 IxaMed at PharmacoNER Challenge 2019 EMNLP 2019 PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition track EMNLP 2019 Recognizing UMLS Semantic Types with Deep Learning EMNLP 2019 When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in Spanish EMNLP 2019