Bioinformatics

Self-Promoted Clustering-based Contrastive Learning for Brain Networks Pretraining IJCAI 2024 Semi-supervised Knowledge Transfer Across Multi-omic Single-cell Data NeurIPS 2024 Semi-supervised Segmentation of Histopathology Images with Noise-Aware Topological Consistency ECCV 2024 Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Generation NeurIPS 2024 Shape analysis for time series NeurIPS 2024 S-MolSearch: 3D Semi-supervised Contrastive Learning for Bioactive Molecule Search NeurIPS 2024 SR-CACO-2: A Dataset for Confocal Fluorescence Microscopy Image Super-Resolution NeurIPS 2024 STimage-1K4M: A histopathology image-gene expression dataset for spatial transcriptomics NeurIPS 2024 string2string: A Modern Python Library for String-to-String Algorithms ACL 2024 SubgDiff: A Subgraph Diffusion Model to Improve Molecular Representation Learning NeurIPS 2024 SurfPro: Functional Protein Design Based on Continuous Surface ICML 2024 Towards Accurate Disease Segmentation in Plant Images: A Comprehensive Dataset Creation and Network Evaluation WACV 2024 Towards a "Universal Translator" for Neural Dynamics at Single-Cell, Single-Spike Resolution NeurIPS 2024 Training Compute-Optimal Protein Language Models NeurIPS 2024 Tree Search-Based Evolutionary Bandits for Protein Sequence Optimization AAAI 2024 TurboHopp: Accelerated Molecule Scaffold Hopping with Consistency Models NeurIPS 2024 Uncertainty-Aware Yield Prediction with Multimodal Molecular Features AAAI 2024 Understanding Transcriptional Regulatory Redundancy by Learnable Global Subset Perturbations ACML 2024 WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking NeurIPS 2024 ZeroDDI: A Zero-Shot Drug-Drug Interaction Event Prediction Method with Semantic Enhanced Learning and Dual-modal Uniform Alignment IJCAI 2024 A Comprehensive Evaluation of Biomedical Entity Linking Models EMNLP 2023 A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design NeurIPS 2023 AliBERT: A Pre-trained Language Model for French Biomedical Text ACL 2023 AniEE: A Dataset of Animal Experimental Literature for Event Extraction EMNLP 2023 Automated Extraction of Molecular Interactions and Pathway Knowledge using Large Language Model, Galactica: Opportunities and Challenges ACL 2023