Bioinformatics

Automatic Glossary of Clinical Terminology: a Large-Scale Dictionary of Biomedical Definitions Generated from Ontological Knowledge ACL 2023 Bidirectional Learning for Offline Model-based Biological Sequence Design ICML 2023 BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance EMNLP 2023 Biomedical Parallel Sentence Retrieval Using Large Language Models EMNLP 2023 BIOptimus: Pre-training an Optimal Biomedical Language Model with Curriculum Learning for Named Entity Recognition ACL 2023 BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations EMNLP 2023 BiSPN: Generating Entity Set and Relation Set Coherently in One Pass EMNLP 2023 Building a Corpus for Biomedical Relation Extraction of Species Mentions ACL 2023 Chemically Transferable Generative Backmapping of Coarse-Grained Proteins ICML 2023 Clustering High-dimensional Data with Ordered Weighted ℓ_1 Regularization AISTATS 2023 CoDrug: Conformal Drug Property Prediction with Density Estimation under Covariate Shift NeurIPS 2023 Data-Driven Network Neuroscience: On Data Collection and Benchmark NeurIPS 2023 DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug Design ICML 2023 Descriptive Knowledge Graph in Biomedical Domain EMNLP 2023 Dirichlet Diffusion Score Model for Biological Sequence Generation ICML 2023 Disease Network Constructor: a Pathway Extraction and Visualization ACL 2023 DISTANT: Distantly Supervised Entity Span Detection and Classification ACL 2023 Drug Discovery under Covariate Shift with Domain-Informed Prior Distributions over Functions ICML 2023 Efficiently predicting high resolution mass spectra with graph neural networks ICML 2023 Enhancing Activity Prediction Models in Drug Discovery with the Ability to Understand Human Language ICML 2023 Exploring the Interaction between Local and Global Latent Configurations for Clustering Single-Cell RNA-Seq: A Unified Perspective AAAI 2023 Extracting Drug-Drug and Protein-Protein Interactions from Text using a Continuous Update of Tree-Transformers ACL 2023 Extrapolative Controlled Sequence Generation via Iterative Refinement ICML 2023 FFF: Fragment-Guided Flexible Fitting for Building Complete Protein Structures CVPR 2023 Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System EMNLP 2023