Bioinformatics

Slot Filling for Biomedical Information Extraction ACL 2022 SNP2Vec: Scalable Self-Supervised Pre-Training for Genome-Wide Association Study ACL 2022 Sparse Fourier Backpropagation in Cryo-EM Reconstruction NeurIPS 2022 Spatial Graph Attention and Curiosity-driven Policy for Antiviral Drug Discovery ICLR 2022 Text-to-Text Extraction and Verbalization of Biomedical Event Graphs COLING 2022 The Functional LiNGAM PGM 2022 ToDD: Topological Compound Fingerprinting in Computer-Aided Drug Discovery NeurIPS 2022 Unifying Likelihood-free Inference with Black-box Optimization and Beyond ICLR 2022 Variational Mixtures of ODEs for Inferring Cellular Gene Expression Dynamics ICML 2022 ZINB-Based Graph Embedding Autoencoder for Single-Cell RNA-Seq Interpretations AAAI 2022 A Structured Observation Distribution for Generative Biological Sequence Prediction and Forecasting ICML 2021 Bayesian Distance Clustering JMLR 2021 Coreference Resolution for the Biomedical Domain: A Survey EMNLP 2021 CSGNN: Contrastive Self-Supervised Graph Neural Network for Molecular Interaction Prediction IJCAI 2021 Disentangling syntax and semantics in the brain with deep networks ICML 2021 Effective Clustering of scRNA-seq Data to Identify Biomarkers without User Input AAAI 2021 Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model ICML 2021 Estimation and Inference for High Dimensional Generalized Linear Models: A Splitting and Smoothing Approach JMLR 2021 Fast End-to-End Learning on Protein Surfaces CVPR 2021 FJWU Participation for the WMT21 Biomedical Translation Task EMNLP 2021 Fold2Seq: A Joint Sequence(1D)-Fold(3D) Embedding-based Generative Model for Protein Design ICML 2021 Gaining Insight into SARS-CoV-2 Infection and COVID-19 Severity Using Self-supervised Edge Features and Graph Neural Networks AAAI 2021 Gene Regulatory Network Inference using 3D Convolutional Neural Network AAAI 2021 Graphine: A Dataset for Graph-aware Terminology Definition Generation EMNLP 2021 High Frequent In-domain Words Segmentation and Forward Translation for the WMT21 Biomedical Task EMNLP 2021