Bioinformatics

Improving Molecular Graph Neural Network Explainability with Orthonormalization and Induced Sparsity ICML 2021 Integrated Principal Components Analysis JMLR 2021 Interacting Knowledge Sources, Inspection and Analysis: Case-studies on Biomedical text processing EMNLP 2021 Language models enable zero-shot prediction of the effects of mutations on protein function NeurIPS 2021 Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction IJCAI 2021 Longitudinal Deep Kernel Gaussian Process Regression AAAI 2021 MELINDA: A Multimodal Dataset for Biomedical Experiment Method Classification AAAI 2021 Modular Self-Supervision for Document-Level Relation Extraction EMNLP 2021 Mol2Image: Improved Conditional Flow Models for Molecule to Image Synthesis CVPR 2021 MorphVAE: Generating Neural Morphologies from 3D-Walks using a Variational Autoencoder with Spherical Latent Space ICML 2021 MSA Transformer ICML 2021 Neural Distance Embeddings for Biological Sequences NeurIPS 2021 Neural Pharmacodynamic State Space Modeling ICML 2021 PANTHER: Pathway Augmented Nonnegative Tensor Factorization for HighER-order Feature Learning AAAI 2021 PSSM-Distil: Protein Secondary Structure Prediction (PSSP) on Low-Quality PSSM by Knowledge Distillation with Contrastive Learning AAAI 2021 Relational Classification of Biological Cells in Microscopy Images AAAI 2021 Scaling up Continuous-Time Markov Chains Helps Resolve Underspecification NeurIPS 2021 Structure Learning of Undirected Graphical Models for Count Data JMLR 2021 A Comprehensive Dictionary and Term Variation Analysis for COVID-19 and SARS-CoV-2 EMNLP 2020 A Convolutional Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction NeurIPS 2020 Adaptive Learning of Rank-One Models for Efficient Pairwise Sequence Alignment NeurIPS 2020 A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction ACL 2020 A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction AAAI 2020 Amalgamation of protein sequence, structure and textual information for improving protein-protein interaction identification ACL 2020 An Auxiliary Task for Learning Nuclei Segmentation in 3D Microscopy Images MIDL 2020