Bioinformatics

The SOFC-Exp Corpus and Neural Approaches to Information Extraction in the Materials Science Domain ACL 2020 The Unreasonable Effectiveness of Inverse Reinforcement Learning in Advancing Cancer Research AAAI 2020 Transformer-based Approach for Predicting Chemical Compound Structures AACL 2020 Unsupervised Instance Segmentation in Microscopy Images via Panoptic Domain Adaptation and Task Re-Weighting CVPR 2020 A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes AAAI 2019 A Fast Machine Learning Workflow for Rapid Phenotype Prediction from Whole Shotgun Metagenomes AAAI 2019 A Multitask Multiple Kernel Learning Algorithm for Survival Analysis with Application to Cancer Biology ICML 2019 Bacteria Biotope at BioNLP Open Shared Tasks 2019 EMNLP 2019 Biomedical relation extraction with pre-trained language representations and minimal task-specific architecture EMNLP 2019 BioRelEx 1.0: Biological Relation Extraction Benchmark ACL 2019 BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes EMNLP 2019 DeepGeneMD: A Joint Deep Learning Model for Extracting Gene Mutation-Disease Knowledge from PubMed Literature EMNLP 2019 DEFSI: Deep Learning Based Epidemic Forecasting with Synthetic Information AAAI 2019 Dependent relevance determination for smooth and structured sparse regression JMLR 2019 Embedding Biomedical Ontologies by Jointly Encoding Network Structure and Textual Node Descriptors ACL 2019 End-to-End Learning on 3D Protein Structure for Interface Prediction NeurIPS 2019 End-to-end Training of Deep Probabilistic CCA on Paired Biomedical Observations UAI 2019 Entity, Relation, and Event Extraction with Contextualized Span Representations EMNLP 2019 Evaluation of Scientific Elements for Text Similarity in Biomedical Publications ACL 2019 Exploring Diachronic Changes of Biomedical Knowledge using Distributed Concept Representations ACL 2019 FSM: A Fast Similarity Measurement for Gene Regulatory Networks via Genes' Influence Power IJCAI 2019 Generative Models for Graph-Based Protein Design NeurIPS 2019 Integration of Deep Learning and Traditional Machine Learning for Knowledge Extraction from Biomedical Literature EMNLP 2019 Linguistically Informed Relation Extraction and Neural Architectures for Nested Named Entity Recognition in BioNLP-OST 2019 EMNLP 2019 Maximum Likelihood for Gaussian Process Classification and Generalized Linear Mixed Models under Case-Control Sampling JMLR 2019