Bioinformatics

MedNorm: A Corpus and Embeddings for Cross-terminology Medical Concept Normalisation ACL 2019 MoNERo: a Biomedical Gold Standard Corpus for the Romanian Language ACL 2019 Multiplicative local linear hazard estimation and best one-sided cross-validation JMLR 2019 Neural Dependency Parsing of Biomedical Text: TurkuNLP entry in the CRAFT Structural Annotation Task EMNLP 2019 Neural Dynamics Discovery via Gaussian Process Recurrent Neural Networks UAI 2019 NeVAE: A Deep Generative Model for Molecular Graphs AAAI 2019 Probabilistic Programming for Birth-Death Models of Evolution Using an Alive Particle Filter with Delayed Sampling UAI 2019 ReAl-LiFE: Accelerating the Discovery of Individualized Brain Connectomes on GPUs AAAI 2019 Recognizing UMLS Semantic Types with Deep Learning EMNLP 2019 Semi-Supervised Learning for Electron Microscopy Image Segmentation AAAI 2019 Terminology-Aware Segmentation and Domain Feature for the WMT19 Biomedical Translation Task ACL 2019 Topology Reconstruction of Tree-Like Structure in Images via Structural Similarity Measure and Dominant Set Clustering CVPR 2019 Towards Gene Function Prediction via Multi-Networks Representation Learning AAAI 2019 Using Snomed to recognize and index chemical and drug mentions. EMNLP 2019 UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition EMNLP 2019 YNU-junyi in BioNLP-OST 2019: Using CNN-LSTM Model with Embeddings for SeeDev Binary Event Extraction EMNLP 2019 A Bayesian Approach for Inferring Local Causal Structure in Gene Regulatory Networks PGM 2018 A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models ICML 2018 A Framework for Developing and Evaluating Word Embeddings of Drug-named Entity ACL 2018 A Neural Autoencoder Approach for Document Ranking and Query Refinement in Pharmacogenomic Information Retrieval ACL 2018 AttentionMeSH: Simple, Effective and Interpretable Automatic MeSH Indexer EMNLP 2018 Bacteria and Biotope Entity Recognition Using A Dictionary-Enhanced Neural Network Model ACL 2018 Bayesian multi-domain learning for cancer subtype discovery from next-generation sequencing count data NeurIPS 2018 Causal Structure Learning via Temporal Markov Networks PGM 2018 CRF-LSTM Text Mining Method Unveiling the Pharmacological Mechanism of Off-target Side Effect of Anti-Multiple Myeloma Drugs ACL 2018