Bioinformatics

SemlaFlow – Efficient 3D Molecular Generation with Latent Attention and Equivariant Flow Matching AISTATS 2025 Sequence models for continuous cell cycle stage prediction from brightfield images MIDL 2025 Shared Task at Biolaysumm2025 : Extract then summarize approach Augmented with UMLS based Definition Retrieval for Lay Summary generation. ACL 2025 Sidechain conditioning and modeling for full-atom protein sequence design with FAMPNN ICML 2025 SMAFIRA Shared Task at the BioNLP’2025 Workshop: Assessing the Similarity of the Research Goal ACL 2025 SPACE: Your Genomic Profile Predictor is a Powerful DNA Foundation Model ICML 2025 Sparse Causal Effect Estimation using Two-Sample Summary Statistics in the Presence of Unmeasured Confounding AISTATS 2025 Sparse Semiparametric Discriminant Analysis for High-dimensional Zero-inflated Data JMLR 2025 Spatial Clustering of Citizen Science Data Improves Downstream Species Distribution Models AAAI 2025 Spatially Resolved Transcriptomics Data Clustering with Tailored Spatial-scale Modulation IJCAI 2025 SpotDiff: Spatial Gene Expression Imputation Diffusion with Single-Cell RNA Sequencing Data Integration AAAI 2025 State-of-the-Art Text-Prompted Medical Segmentation Models Struggle to Ground Chest CT Findings MLHC 2025 STINR: Deciphering Spatial Transcriptomics via Implicit Neural Representation CVPR 2025 SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics ICML 2025 SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics ICML 2025 SWAMamba: A Sliding Window Attention Mamba Framework for Predicting Translation Elongation Rates AAAI 2025 The CausalBench challenge: A machine learning contest for gene network inference from single-cell perturbation data CLeaR 2025 The Strong Product Model for Network Inference without Independence Assumptions AISTATS 2025 The VampPrior Mixture Model AISTATS 2025 Towards Better Multi-task Learning: A Framework for Optimizing Dataset Combinations in Large Language Models NAACL 2025 Universal Biological Sequence Reranking for Improved De Novo Peptide Sequencing ICML 2025 Unravelling Causal Genetic Biomarkers of Alzheimer’s Disease via Neuron to Gene-token Backtracking in Neural Architecture: A Groundbreaking Reverse-Gene-Finder Approach AAAI 2025 Unsupervised Identification of Protein Compositions and Conformations via Implicit Content-Transformation Disentanglement ICCV 2025 Virtual CRISPR: Can LLMs Predict CRISPR Screen Results? ACL 2025 Wasserstein F-tests for Frechet regression on Bures-Wasserstein manifolds JMLR 2025