Bioinformatics

What Ails Generative Structure-based Drug Design: Expressivity is Too Little or Too Much? AISTATS 2025 Whole Genome Transformer for Gene Interaction Effects in Microbiome Habitat Specificity AAAI 2025 NeuroPath: A Neural Pathway Transformer for Joining the Dots of Human Connectomes NeurIPS 2024 A benchmark for prediction of transcriptomic responses to chemical perturbations across cell types NeurIPS 2024 Absorb & Escape: Overcoming Single Model Limitations in Generating Heterogeneous Genomic Sequences NeurIPS 2024 Accurate Spatial Gene Expression Prediction by Integrating Multi-Resolution Features CVPR 2024 A Computational Framework for Solving Wasserstein Lagrangian Flows ICML 2024 ActSort: An active-learning accelerated cell sorting algorithm for large-scale calcium imaging datasets NeurIPS 2024 AI for Science in the Era of Large Language Models EMNLP 2024 A Label Disambiguation-Based Multimodal Massive Multiple Instance Learning Approach for Immune Repertoire Classification AAAI 2024 Aligning Target-Aware Molecule Diffusion Models with Exact Energy Optimization NeurIPS 2024 An LLM-based Knowledge Synthesis and Scientific Reasoning Framework for Biomedical Discovery ACL 2024 A Novel Evolutionary Multitasking Feature Selection Approach for Genomic Data Classification ACML 2024 Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization NeurIPS 2024 A probability contrastive learning framework for 3D molecular representation learning NeurIPS 2024 A scalable generative model for dynamical system reconstruction from neuroimaging data NeurIPS 2024 AsEP: Benchmarking Deep Learning Methods for Antibody-specific Epitope Prediction NeurIPS 2024 Association Pattern-aware Fusion for Biological Entity Relationship Prediction NeurIPS 2024 Atom-Level Optical Chemical Structure Recognition with Limited Supervision CVPR 2024 A versatile informative diffusion model for single-cell ATAC-seq data generation and analysis NeurIPS 2024 BAND: Biomedical Alert News Dataset AAAI 2024 BEACON: Benchmark for Comprehensive RNA Tasks and Language Models NeurIPS 2024 Beyond Structured Attributes: Image-Based Predictive Trends for Chest X-Ray Classification MIDL 2024 Binding-Adaptive Diffusion Models for Structure-Based Drug Design AAAI 2024 BioCLIP: A Vision Foundation Model for the Tree of Life CVPR 2024