Bioinformatics

Biomedical Knowledge Graph Embedding with Householder Projection (Student Abstract) AAAI 2024 BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity NeurIPS 2024 BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning ACL 2024 Bridge-IF: Learning Inverse Protein Folding with Markov Bridges NeurIPS 2024 Calibrated and Conformal Propensity Scores for Causal Effect Estimation UAI 2024 Can Transformers Smell Like Humans? NeurIPS 2024 CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes NeurIPS 2024 CEGAR-Based Approach for Solving Combinatorial Optimization Modulo Quantified Linear Arithmetics Problems AAAI 2024 Cell ontology guided transcriptome foundation model NeurIPS 2024 [Citation needed] Data usage and citation practices in medical imaging conferences MIDL 2024 Clustering for Protein Representation Learning CVPR 2024 Comprehensive View Embedding Learning for Single-Cell Multimodal Integration AAAI 2024 Conditional Synthesis of 3D Molecules with Time Correction Sampler NeurIPS 2024 Contrastive dimension reduction: when and how? NeurIPS 2024 Contrastive losses as generalized models of global epistasis NeurIPS 2024 Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody Designer AAAI 2024 CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM NeurIPS 2024 CryoSPIN: Improving Ab-Initio Cryo-EM Reconstruction with Semi-Amortized Pose Inference NeurIPS 2024 DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA NeurIPS 2024 Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective ICML 2024 Deep Reinforcement Learning for Modelling Protein Complexes ICLR 2024 DePLM: Denoising Protein Language Models for Property Optimization NeurIPS 2024 Designing Cell-Type-Specific Promoter Sequences Using Conservative Model-Based Optimization NeurIPS 2024 Distribution-Independent Cell Type Identification for Single-Cell RNA-seq Data IJCAI 2024 Dynamics-Informed Protein Design with Structure Conditioning ICLR 2024