Bioinformatics

A Survey of Large Language Models for Text-Guided Molecular Discovery: From Molecule Generation to Optimization ACL 2026 BiGMINT: Biologically-guided Hierarchical Multimodal Integration for Modeling Multiple Compound Activities in Drug Discovery CVPR 2026 BiMol-Diff: A Unified Diffusion Framework for Molecular Generation and Captioning ACL 2026 BioTool: A Comprehensive Tool-Calling Dataset for Enhancing Biomedical Capabilities of Large Language Models ACL 2026 Coordinate Denoising for Non-Equilibrium Molecular Representation Learning CVPR 2026 Cross-Slice Knowledge Transfer via Masked Multi-Modal Heterogeneous Graph Contrastive Learning for Spatial Gene Expression Inference CVPR 2026 FEAST: Fully Connected Expressive Attention for Spatial Transcriptomics CVPR 2026 GEMCONT: Genetics-based Multimodal Contrastive Learning Enhances Phenotypic embeddings and Boosts Genetic Discovery MIDL 2026 GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding ACL 2026 HyperST: Hierarchical Hyperbolic Learning for Spatial Transcriptomics Prediction CVPR 2026 Interleaved Tool-Call Reasoning for Protein Function Understanding ACL 2026 Learning Lineage-guided Geodesics with Finsler Geometry UAI 2026 LLM4Cell: Taxonomy and Evaluation of LLM and Agentic Models for Single-Cell Biology ACL 2026 MMCP-GEN: A Modality-Extensible Diffusion Language Model for Conditional Protein Sequence Generation CVPR 2026 Multimodal Protein Language Models for Enzyme Kinetic Parameters: From Substrate Recognition to Conformational Adaptation CVPR 2026 Predicting Spatial Transcriptomics from Histology Images via High-Order Multi-Cell Interaction Modeling CVPR 2026 Protein-STORY: Semantic Text-Oriented Representation Yields biologically meaningful Protein embeddings ACL 2026 Steering Where to Diffuse: Generative Modeling of Phenotypic Response Simulation with Steered Diffusion Bridge CVPR 2026 TIGER: Text-Informed Generalized Enzyme-Reaction Retrieval ACL 2026 Towards Identifiability of Interventional Stochastic Differential Equations UAI 2026 TRIDENT: A Trimodal Cascade Generative Framework for Drug and RNA-Conditioned Cellular Morphology Synthesis CVPR 2026 Unpaired Multimodal Learning for Biological Datasets MIDL 2026 Unsupervised Multi-Scale Segmentation of 3D Subcellular World with Stable Diffusion Foundation Model CVPR 2026 3D Denoisers Are Good 2D Teachers: Molecular Pretraining via Denoising and Cross-Modal Distillation AAAI 2025 4D Diffusion for Dynamic Protein Structure Prediction with Reference and Motion Guidance AAAI 2025