protein structure

Dynamic Geometric Equivariant Network for Full-Atom Antibody Design AAAI 2026 Full-Atom Peptide Design via Riemannian–Euclidean Bayesian Flow Networks AAAI 2026 S²Drug: Bridging Protein Sequence and 3D Structure in Contrastive Representation Learning for Virtual Screening AAAI 2026 AtomSurf: Surface Representation for Learning on Protein Structures ICLR 2025 cryoSPHERE: Single-Particle HEterogeneous REconstruction from cryo EM ICLR 2025 DPLM-2: A Multimodal Diffusion Protein Language Model ICLR 2025 dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen AAAI 2025 EVA: Geometric Inverse Design for Fast Protein Motif-Scaffolding with Coupled Flow ICLR 2025 FoldToken: Learning Protein Language via Vector Quantization and Beyond AAAI 2025 FusionDTI: Fine-grained Binding Discovery with Token-level Fusion for Drug-Target Interaction EMNLP 2025 GLProtein: Global-and-Local Structure Aware Protein Representation Learning EMNLP 2025 HeMeNet: Heterogeneous Multichannel Equivariant Network for Protein Multi-task Learning AAAI 2025 LM2Protein: A Structure-to-Token Protein Large Language Model EMNLP 2025 M²N: A Progressive Macro-to-Micro 3D Modeling Scheme for Unveiling Drug-Target Affinity AAAI 2025 MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction ICLR 2025 Proteina: Scaling Flow-based Protein Structure Generative Models ICLR 2025 R-DTI: Drug Target Interaction Prediction Based on Second-Order Relevance Exploration AAAI 2025 Relation-Aware Equivariant Graph Networks for Epitope-Unknown Antibody Design and Specificity Optimization AAAI 2025 SAGEPhos: Sage Bio-Coupled and Augmented Fusion for Phosphorylation Site Detection ICLR 2025 Unsupervised Identification of Protein Compositions and Conformations via Implicit Content-Transformation Disentanglement ICCV 2025 Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization NeurIPS 2024 Cross-Gate MLP with Protein Complex Invariant Embedding Is a One-Shot Antibody Designer AAAI 2024 Deep Confident Steps to New Pockets: Strategies for Docking Generalization ICLR 2024 De novo Protein Design Using Geometric Vector Field Networks ICLR 2024 Enhancing Protein Mutation Effect Prediction through a Retrieval-Augmented Framework NeurIPS 2024