protein structure

Multi-level Protein Structure Pre-training via Prompt Learning ICLR 2023 PointListNet: Deep Learning on 3D Point Lists CVPR 2023 Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model NeurIPS 2023 Pre-Training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction NeurIPS 2023 ProteinInvBench: Benchmarking Protein Inverse Folding on Diverse Tasks, Models, and Metrics NeurIPS 2023 Protein Sequence and Structure Co-Design with Equivariant Translation ICLR 2023 Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction ICLR 2023 Symmetry-Informed Geometric Representation for Molecules, Proteins, and Crystalline Materials NeurIPS 2023 6DCNN with Roto-Translational Convolution Filters for Volumetric Data Processing AAAI 2022 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures NeurIPS 2022 Contact-Distil: Boosting Low Homologous Protein Contact Map Prediction by Self-Supervised Distillation AAAI 2022 Geometric Transformers for Protein Interface Contact Prediction ICLR 2022 Graphein - a Python Library for Geometric Deep Learning and Network Analysis on Biomolecular Structures and Interaction Networks NeurIPS 2022 Learning inverse folding from millions of predicted structures ICML 2022 Self-Supervised Pre-training for Protein Embeddings Using Tertiary Structures AAAI 2022 BERTology Meets Biology: Interpreting Attention in Protein Language Models ICLR 2021 Co-evolution Transformer for Protein Contact Prediction NeurIPS 2021 CryoDRGN2: Ab Initio Neural Reconstruction of 3D Protein Structures From Real Cryo-EM Images ICCV 2021 Efficient Generative Modelling of Protein Structure Fragments using a Deep Markov Model ICML 2021 Fast End-to-End Learning on Protein Surfaces CVPR 2021 Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures ICLR 2021 Learning from Protein Structure with Geometric Vector Perceptrons ICLR 2021 MSA Transformer ICML 2021 Multi-Scale Representation Learning on Proteins NeurIPS 2021 Transformer protein language models are unsupervised structure learners ICLR 2021