protein structure

Evaluating Representation Learning on the Protein Structure Universe ICLR 2024 Foundation Model for Biomedical Graphs: Integrating Knowledge Graphs and Protein Structures to Large Language Models ACL 2024 Full-Atom Peptide Design with Geometric Latent Diffusion NeurIPS 2024 Generating Highly Designable Proteins with Geometric Algebra Flow Matching NeurIPS 2024 Improving PTM Site Prediction by Coupling of Multi-Granularity Structure and Multi-Scale Sequence Representation AAAI 2024 Mixture of neural fields for heterogeneous reconstruction in cryo-EM NeurIPS 2024 Multi-Scale Representation Learning for Protein Fitness Prediction NeurIPS 2024 Pre-training Sequence, Structure, and Surface Features for Comprehensive Protein Representation Learning ICLR 2024 ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention NeurIPS 2024 PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction AAAI 2024 SaProt: Protein Language Modeling with Structure-aware Vocabulary ICLR 2024 SE(3)-Stochastic Flow Matching for Protein Backbone Generation ICLR 2024 Self-supervised Pocket Pretraining via Protein Fragment-Surroundings Alignment ICLR 2024 Towards Stable Representations for Protein Interface Prediction NeurIPS 2024 AbDiffuser: full-atom generation of in-vitro functioning antibodies NeurIPS 2023 A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design NeurIPS 2023 Chemically Transferable Generative Backmapping of Coarse-Grained Proteins ICML 2023 Continuous-Discrete Convolution for Geometry-Sequence Modeling in Proteins ICLR 2023 End-to-End Full-Atom Antibody Design ICML 2023 FFF: Fragment-Guided Flexible Fitting for Building Complete Protein Structures CVPR 2023 Full-Atom Protein Pocket Design via Iterative Refinement NeurIPS 2023 GLPocket: A Multi-Scale Representation Learning Approach for Protein Binding Site Prediction IJCAI 2023 Graph Denoising Diffusion for Inverse Protein Folding NeurIPS 2023 Injecting Multimodal Information into Rigid Protein Docking via Bi-level Optimization NeurIPS 2023 Learning Hierarchical Protein Representations via Complete 3D Graph Networks ICLR 2023